List of publications

Here is my list of publications, (exported from HAL using HalTools).

Journal articles

2016

  • Rutger Fick, Demian Wassermann, Emmanuel Caruyer, Rachid Deriche. MAPL: Tissue Microstructure Estimation Using Laplacian-Regularized MAP-MRI and its Application to HCP Data. NeuroImage, Elsevier, 2016, 134, pp.365-385. <10.1016/j.neuroimage.2016.03.046>. <hal-01291929> https://hal.inria.fr/hal-01291929/file/fick-neuroimage16-mapl.pdf BibTex

2015

  • Farshid Sepehrband, Jeiran Choupan, Emmanuel Caruyer, Nyoman Kurniawan, Yaniv Gal, et al.. lop-DWI: A Novel Scheme for Pre-Processing of Diffusion Weighted Images in the Gradient Direction Domain. Frontiers in Neurology, Frontiers, 2015, 5 (290), <10.3389/fneur.2014.00290>. <hal-01103577> https://hal.archives-ouvertes.fr/hal-01103577/file/fneur-05-00290.pdf BibTex

2014

2013

  • Sylvain Merlet, Emmanuel Caruyer, Aurobrata Ghosh, Rachid Deriche. A computational diffusion MRI and parametric dictionary learning framework for modeling the diffusion signal and its features. Medical Image Analysis, Elsevier, 2013, pp.MEDIMA779. <10.1016/j.media.2013.04.011>. <hal-00820817> https://hal.archives-ouvertes.fr/hal-00820817/file/merlet-etal-2013.pdf BibTex
  • Emmanuel Caruyer, Christophe Lenglet, Guillermo Sapiro, Rachid Deriche. Design of multishell sampling schemes with uniform coverage in diffusion MRI. Magnetic Resonance in Medicine, Wiley, 2013, 69 (6), pp.1534-1540. <10.1002/mrm.24736>. <hal-00821688> https://hal.inria.fr/hal-00821688/file/article.pdf BibTex
  • Emmanuel Caruyer, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Rachid Deriche. Motion Detection in Diffusion MRI via Online ODF Estimation. International Journal of Biomedical Imaging, Hindawi Publishing Corporation, 2013, 2013 (Article ID 84936), pp.1-8. <10.1155/2013/849363>. <hal-00798582> BibTex

2012

  • Emmanuel Caruyer, Rachid Deriche. Diffusion MRI Signal Reconstruction with Continuity Constraint and Optimal Regularization. Medical Image Analysis, Elsevier, 2012, 16 (6), pp.1113-1120. <10.1016/j.media.2012.06.011>. <hal-00711883> https://hal.inria.fr/hal-00711883/file/article.pdf BibTex

Conference papers

2014

  • Jérémy Lecoeur, Emmanuel Caruyer, Mark Elliott, Steven Brem, Luke Macyszyn, et al.. Addressing the Challenge of Edema in Fiber Tracking. MICCAI 2014 DTI Tractography Challenge, Sep 2014, Boston, United States. 2014. <hal-01072222> https://hal.inria.fr/hal-01072222/file/lecoeur-caruyer-etal-miccai-dti-challenge-2014.pdf BibTex
  • Emmanuel Caruyer, Alessandro Daducci, Maxime Descoteaux, Jean-Christophe Houde, Jean-Philippe Thiran, et al.. Phantomas: a flexible software library to simulate diffusion MR phantoms. ISMRM, May 2014, Milan, Italy. 2014. <hal-00944644> https://hal.inria.fr/hal-00944644/file/caruyer-daducci-etal-ismrm14.pdf BibTex
  • Emmanuel Caruyer, Luke Bloy, Birkan Tunç, Jérémy Lecoeur, Varsha Shankar, et al.. A comparative study of 16 tractography algorithms for the corticospinal tract: reproducibility and subject-specificity. ISMRM, May 2014, Milan, Italy. 2014. <hal-00944649> https://hal.inria.fr/hal-00944649/file/caruyer-bloy-etal-ismrm14.pdf BibTex
  • Emmanuel Caruyer, Ragini Verma. Rotation-invariant measures for population study in HARDI. ISMRM, May 2014, Milan, Italy. 2014. <hal-00944646> https://hal.inria.fr/hal-00944646/file/caruyer-verma-ismrm14.pdf BibTex
  • Jean-Christophe Houde, Emmanuel Caruyer, Alessandro Daducci, Maxime Descoteaux. How should tractography go forward? A Tractometer evaluation of local reconstruction and tracking. ISMRM, May 2014, Milan, Italy. pp.6470, 2014. <hal-01033816> https://hal.archives-ouvertes.fr/hal-01033816/file/houde-caruyer-etal-ismrm14.pdf BibTex

2013

  • Jérémy Lecoeur, Emmanuel Caruyer, Luke Macyszyn, Ragini Verma. Improving White Matter Tractography by Resolving the Challenges of Edema. MICCAI 2013 DTI Tractography Challenge, Sep 2013, Nagoya, Japan. 2013. <hal-00850496> https://hal.inria.fr/hal-00850496/file/lecoeur-caruyer-etal-miccai-dti-challenge-13.pdf BibTex

2012

  • Emmanuel Caruyer, Rachid Deriche. A Computational Framework for Experimental Design in Diffusion MRI. CDMRI - MICCAI Workshop on Computational Diffusion MRI, Oct 2012, Nice, France. 2012. <hal-00747700> https://hal.inria.fr/hal-00747700/file/article.pdf BibTex
  • Sylvain Merlet, Emmanuel Caruyer, Rachid Deriche. Parametric dictionary learning for modeling EAP and ODF in diffusion MRI. Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 2012, Nice, France. Springer, 7512, 8 p., 2012, Lecture notes in computer science. <hal-00728067> https://hal.archives-ouvertes.fr/hal-00728067/file/paper_791.pdf BibTex
  • Emmanuel Caruyer, Rachid Deriche. Optimal Regularization for MR Diffusion Signal Reconstruction. ISBI - 9th IEEE International Symposium on Biomedical Imaging, May 2012, Barcelona, Spain. 2012. <hal-00660635> https://hal.inria.fr/hal-00660635/file/article.pdf BibTex
  • Sylvain Merlet, Emmanuel Caruyer, Aurobrata Ghosh, Rachid Deriche. Parametric Dictionary Learning in Diffusion MRI. HARDI reconstruction workshop - ISBI - International Symposium on Biomedical Imaging, May 2012, Barcelona, Spain. 2012. <hal-00697102> https://hal.inria.fr/hal-00697102/file/merlet-caruyer-etal_HARDI-Contest-ISBI-2012.pdf BibTex

2011

  • Emmanuel Caruyer, Jian Cheng, Christophe Lenglet, Guillermo Sapiro, Tianzi Jiang, et al.. Optimal Design of Multiple Q-shells experiments for Diffusion MRI. MICCAI Workshop on Computational Diffusion MRI - CDMRI'11, Sep 2011, Toronto, Canada. 2011. <inria-00617663> https://hal.inria.fr/inria-00617663/file/article.pdf BibTex
  • Sylvain Merlet, Emmanuel Caruyer, Rachid Deriche. Impact of radial and angular sampling on multiple shells acquisition in diffusion MRI. Fichtinger, Gabor and Martel, Anne and Peters, Terry. MICCAI 2011, Sep 2011, Toronto, Canada. Springer, 6891, pp.113-121, 2011, Lecture Notes in Computer Science. <hal-00614387> https://hal.archives-ouvertes.fr/hal-00614387/file/MICCAI_2011_paperReady.pdf BibTex
  • Jian Cheng, Sylvain Merlet, Emmanuel Caruyer, Aurobrata Ghosh, Tianzi Jiang, et al.. Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging. MICCAI Workshop on Computational Diffusion MRI - CDMRI'11, Sep 2011, Toronto, Canada. 2011. <inria-00615434> https://hal.inria.fr/inria-00615434/file/L1-SPFI_CDMRI2011.pdf BibTex
  • Emmanuel Caruyer, Christophe Lenglet, Guillermo Sapiro, Rachid Deriche. Incremental gradient table for multiple Q-shells diffusion MRI. HBM 17th Annual Meeting, Jun 2011, Québec, Canada. 2011. <inria-00617957> https://hal.inria.fr/inria-00617957/file/article.pdf BibTex
  • Emmanuel Caruyer, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Rachid Deriche. On Line Reconstruction and Motion Detection in HARDI. 19th ISMRM annual meeting, May 2011, Montréal, Canada. 2011. <inria-00560899> https://hal.inria.fr/inria-00560899/file/ISMRM11.pdf BibTex
  • Jian Cheng, Sylvain Merlet, Aurobrata Ghosh, Emmanuel Caruyer, Tianzi Jiang, et al.. Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging. ISMRM, May 2011, Montréal, Canada. 2011. <inria-00615437> https://hal.inria.fr/inria-00615437/file/L1SPFI_CS_ISMRM_final.pdf BibTex
  • Emmanuel Caruyer, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Rachid Deriche. Online Motion Detection in High Angular Resolution Diffusion Imaging. International Symposium on Biomedical Imaging: From Nano to Macro, Mar 2011, Chicago, United States. 2011. <inria-00559904v2> https://hal.inria.fr/inria-00559904/file/article.pdf BibTex

2010

  • Emmanuel Caruyer, Iman Aganj, Ryan Muetzel, Christophe Lenglet, Guillermo Sapiro, et al.. Online orientation distribution function reconstruction in constant solid angle and its application to motion detection in HARDI. International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2010, Rotterdam, Netherlands. 2010. <inria-00559884> https://hal.inria.fr/inria-00559884/file/article.pdf BibTex

2009

  • Emmanuel Caruyer, Rachid Deriche. Adaptive Design of Sampling Directions in Diffusion Tensor MRI and Validation on Human Brain Images. MICCAI Workshop on Diffusion Modelling and the Fiber Cup, Sep 2009, Londres, United Kingdom. 2009. <inria-00560054> https://hal.inria.fr/inria-00560054/file/miccai09.pdf BibTex

Master thesis

2007

  • Emmanuel Caruyer. Signal and Noise in Diffusion Magnetic Resonance Images. Medical Imaging. 2007. <dumas-00880381> https://dumas.ccsd.cnrs.fr/dumas-00880381/file/rapport_stage_master_caruyer.pdf BibTex

Reports

2009

  • Emmanuel Caruyer, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Rachid Deriche. Online orientation distribution function reconstruction in constant solid angle and its application to motion detection in high angular resolution diffusion imaging. [Research Report] RR-7102, INRIA. 2009, pp.12. <inria-00432959> https://hal.inria.fr/inria-00432959/file/RR-7102.pdf BibTex

Theses

2012

  • Emmanuel Caruyer. IRM de diffusion du Q-space : Acquisition et pré-traitements. Medical Imaging. Université Nice Sophia Antipolis, 2012. English. <tel-00750144> https://tel.archives-ouvertes.fr/tel-00750144/file/these.pdf BibTex